APBC2021: The 19th Asia Pacific Bioinformatics Conference

Accepted Papers

Number	Titles	Authors
SUPP-D-20-00317	A tool for analyzing and visualizing ribosome profiling data at the isoform level	Joseph T. Tseng
SUPP-D-20-00320	Modular signature of long non-coding RNA association networks as a prognostic biomarker in lung cancer	Albert Li
SUPP-D-20-00322	SCYN: Single cell CNV profiling method using dynamic programming	Xikang Feng
SUPP-D-20-00379	Integrated OMICs approach for the group 1 protease mite-allergen of house dust mite Dermatophagoides microceras.	Yu-Fan Liu
SUPP-D-20-00417	Decoding herbal materials of TCM preparations with the multi-barcode sequencing approach: assessment of solidity on diverse set of preparations	Xue Zhu
SUPP-D-20-00418	Gene Expression Data Classification Using Topology and Machine Learning Models	Soham Mukherjee
SUPP-D-20-00447	Maximum Parsimony Reconciliation in the DTLOR Model	Ran Libeskind-Hadas
SUPP-D-20-00449	Deep GONet: Self-explainable deep neural network based on Gene Ontology for phenotype prediction from gene expression data	Victoria Bourgeais
SUPP-D-20-00453	Identifying health related occupations of Twitter Users through word embedding and deep neural networks	Gautam Srivastava
SUPP-D-20-00459	Identification of fish species through tRNA-based primer design	Tun-Wen Pai
SUPP-D-20-00460	Classification of microRNA Disease Association Based on k-mer Sequence Representation Only	Malik Yousef
SUPP-D-20-00463	Ensemble learning for predicting ex vivo human placental barrier permeability	Chun-Wei Tung
SUPP-D-20-00464	Predicting family physicians based on their practice using machine learning	Arunim Garg
SUPP-D-20-00465	Deep neural network models for cell type prediction based on single-cell Hi-C data	Bing Zhou
SUPP-D-20-00466	A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients	Ka-Lok Ng
SUPP-D-20-00468	Correlating Twitter Sentiments with COVID-19: A Tale of Three North American Cities	Andrew Fisher
SUPP-D-20-00469	Deep learning and multi-omics approach to predict drug responses in cancer	Jagath Rajapakse
SUPP-D-20-00470	Identification of novel miRNA signature for estimating survival time in patients with head and neck squamous cell carcinomas	Shinn-Ying Ho
SUPP-D-20-00474	A clinical, genetic and image-aided computational model to infer the development of Alzheimer's disease spectrum	Fan Zhu
SUPP-D-20-00475	The Protein-Protein Interaction Ontology: for Better Representing and Capturing the Biological Context of Protein Interaction	Mansheng Li
SUPP-D-20-00477	Inferring miRNA-disease associations using collaborative filtering and resource allocation on a tripartite graph	Van Tinh Nguyen
SUPP-D-20-00479	Survival-related genes are diversified across cancers but generally enriched in cancer hallmark pathways	Po-Wen Wang
SUPP-D-20-00480	LCMD: Lung Cancer Metabolome Database	Hsin-Yi Wu
SUPP-D-20-00481	A Common Methodological Phylogenomics Framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones	Filippo Utro
SUPP-D-20-00482	Learning Semi-Supervised Enrichment of Longitudinal Imaging-Genetic Data for Improved Prediction of Cognitive	Hoon Seo
SUPP-D-20-00483	Alternative splicing plays key roles in response to stress across different stages of fighting in the fish Betta splendens	Norihiro Okada
SUPP-D-20-00485	Pyramid Focusing Network for mutation prediction and classification in CT images	Vu Trieu-Duc
SUPP-D-20-00486	Pattern recognition of Topology Association Domain using Deep Learning	Xukun Zhang
SUPP-D-20-00488	GRAde: a long-read sequencing approach to efficiently identify the CYP11B1/CYP11B2 chimeric form in patients with glucocorticoid remediable aldosteronism	Chia-Lang Hsu
SUPP-D-20-00489	Genome-wide identification of associations between enhancer and alternative splicing in human and mouse	Huai-Kuang Tsai
SUPP-D-20-00491	Identification and comparative analysis of long non-coding RNAs in the brain of fire ant queens in two different reproductive states	Jia-Hsin Huang
SUPP-D-20-00493	Evaluation validation of a qPCR curve analysis method and conventional approaches	Yashu Zhang
SUPP-D-20-00497	MitoTox: a comprehensive mitochondrial toxicity database	An-Chi Wei
SUPP-D-20-00499	Mining a Stroke Knowledge Graph from literature	Xi Yang
SUPP-D-20-00501	Stratification of lncRNA modulation networks in breast cancer	Wen-Hsuan Yu
SUPP-D-20-00503	CoMI: Consensus Mutual Information for Tissue-specific Gene Signatures	Sing-Han Huang
SUPP-D-20-00505	Predicting subcellular location of protein with evolution information and sequence-based deep learning	Jijun Tang
SUPP-D-20-00506	XGBCDA: A multiple heterogeneous networks-based method for predicting circRNA-disease associations	Shensi Yuan
SUPP-D-20-00507	Constructing lncRNA-miRNA-mRNA networks specific to individual cancer patients and finding prognostic biomarkers	Kyungsook Han
SUPP-D-20-00509	MultiSourcCFS:Inferring circRNA functional similarity based on multiple data sources	Liang Shu
SUPP-D-20-00510	METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs	Zhenmiao Zhang
SUPP-D-20-00511	Velo-Predictor: An Ensemble Learning Pipeline for RNA Velocity Prediction	Xin Wang
SUPP-D-20-00512	CirPred, the first structure modelling and linker design system for circularly-permuted proteins	Wei-Cheng Lo
SUPP-D-20-00532	Development and validation of an expanded targeted sequencing panel for noninvasive prenatal diagnosis of sporadic skeletal dysplasia	Yen-An Tang
SUPP-D-20-00534	CircVIS: A platform for circRNA visual presentation	Kuei-Yang Hsiao
Easychair-2	Resting state functional connectivity analysis during general anesthesia: A high-density EEG study	Ling Zou
Easychair-5	Shaking the β-bulges	Alexandre G. de Brevern
Easychair-10	A New Family of Similarity Measures for Scoring Confidence of Protein Interactions using Gene Ontology	Madhusudan Paul
Easychair-11	Estimation of important binding sites in compounds that interact with proteins	Kouhei Tachibana
Easychair-12	A Clinical Dataset and Various Baselines for Chromosome Instance Segmentation	Runhua Huang
Easychair-14	SPP-CPI: Predicting Compound–Protein Interactions Based on Neural Networks	Xuelian Li
Easychair-19	DeepSIRT: A Deep Neural Network for Identification of Sirtuin Targets and their Subcellular Localizations	Yu Yen Ou
Easychair-21	Gene Expression Analysis of Combined RNA-seq Experiments Using a Receiver Operating Characteristic Calibrated Procedure	Shuen-Lin Jeng
Easychair-23	A Tag Based Joint Extraction Model for Chinese Medical Text	XingYu Liu
Easychair-24	MD-UNET: Multi-input Dilated U-shape Neural Network for Segmenta-tion of Bladder Cancer	Ruiquan Ge
Easychair-26	MultiTrans: a novel algorithm for transcriptome assembly through mixed integer linear programming	Jin Zhao
Easychair-28	GraphPlas: Refined Classification of Plasmid Sequences using Assembly Graphs	Anuradha Wickramarachchi
Easychair-29	Pharmacophore anchor models of ATAT1 to discover potential inhibitors and lead optimization	Nung-Yu Hsu
Easychair-31	Leveraging Sequential and Spatial Neighbors Information by Using CNNs Linked With GCNs for Paratope Prediction	Shuai Lu
Easychair-34	An aggregation method to identify the RNA meta-stable secondary structure and its functionally interpretable structure ensemble	Tzu-Hsien Yang
Easychair-36	An extensive examination of discovering 5-Methylcytosine Sites in Genome-Wide DNA Promoters using machine learning based approaches	Nguyen Trinh Trung Duong
Easychair-38	Inferring gene regulatory network from single-cell transcriptomic data by integrating multiple prior networks	Yanglan Gan
Easychair-40	Efficient Assembly Consensus Algorithms for Divergent Contig Sets	Manuel Lafond