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no title author 1 Searching A Part of DNA Sequence for Possible Protein Structure by Applied Bioinformatics Database Wen-Chao Pan, Wei-Yuan Lin 2 Motif constituents in the yeast protein interaction network discovered through the asymmetric functional annotation Wei-Po Lee, Bing-Chiang Jeng, Wen-Shyong Tzou 3 Clinical implications of electrophysiologic interactions between IKATP activation and IKr blockade during non-ischemic and ischemic conditions: a simulation study Han-Dong Chang, Sheng-Nan Wu, Adonis Z.Wu, Ching-Hsing Luo, Ruey J Sung 4 Solutions to SAT Problems by Modified Sticker Model and Microarray Assisted DNA Computing Hsiao-Ping Cheng, Che-Hsin Lin, Chang-Biau Yang, Chia-Ning Yang 5 Error Reduction On Automatic Segmentation In Microarray Image Yang Chien-Po 6 Regulation of microRNAs (miRNAs) in Hepatocellular carcinoma Chien-Der Lin 7 SNP-RFLPing: restriction enzyme mining for SNP ID Yu-Huei Cheng, Hsueh-Wei Chang, Phei-Lang Chang, Li-Yeh Chuang, Cheng-Hong Yang 8 Coding of DNA Microbeads Array for Error Detection and Correction Wang, Jen-Yi, Chou, Jui-Jen 9 Prediction of the Redox state and Secondary Structure of Cysteine Residues in Proteins by NMR Chemical Shifts Ching-Cheng Wang, Jui-Hung Chen, Shih-His Yin, Woei-Jer Chuang 10 The Selection of Single Nucleotide Polymorphisms for the Drug Efficacy of Antidepressants Using a Pharmacogenomic Approach with Genetic Databases Eugene Lin, Yuchi Hwang 11 A Holter of Low Complexity design Using Mixed Signal Processor Koung Lin Hsieh, ChinTang Hsieh, Eugene Lai 12 A Method for Predicting the Active Sites of Dual-specific Protein Phosphotases Based on Protein Surface Patches Yu-Shiang Huang, Chih-Chin Liu, Whei-Meih Chang 13 Protein-family value-added database constructer with personalized query support Han-Hsiu Chen, Hei Chia Wang 14 Constructing Gene Networks by Referring to Multi-resources Yi-Shiun Lee, Hei Chia Wang 15 inking system dynamics science and systems biology with Machine learning techniques Bingchiang Jeng, Wen-Shyong Tzou, Jian-Xun Chen 16 Evolutionary Analysis of MTA-Related Proteins Yung-Jui Chen, Fu-Ping Chu, Hsueh-Ting Chu, Jeffrey J.P. Tsai 17 A Progressive Image Transmission Method for 2D-GE Image Based on Context Feature With Different Thresholds Meng-Hsiun Tsai, Shu-Fen Chiou, Min-Shiang Hwang 18 Optimal Quality Control for Oligo Arrays Using Genetic Algorithm Ya-Hui Lee, Jain-Shing Wu, Chungnan Lee 19 Genome-wide in silico identification of transcriptional modules regulating the gene expression during mammalian cell cycle. Meng-Chang Hsiao, Wei-Yuan Chang, Tun-Wen Pai, Wen-Shyong Tzou 20 Modeling, QBE-like Query and Processing for Metabolic Pathway Data Jia-Lien Hsu, Ching-Yang Chang 21 Filtering Bio-sequence Based on Sequence Descriptor Te-Wen Hsieh, Huang-Cheng Kuo 22 Identification of Promoter Sequences using Markov Chain and Relative Entropy Cheng-Fa Cheng, Yi-Jen Chen 23 Protein Coding Regions Prediction by Optimal Discrimination Noise Suppression Algorithm Cheng-Fa Cheng, Meng-Wei Lee 24 dbDSP: A Comprehensive Database of Dual Specificity Phosphatases from Worms to Humans Chih-Chiu Liu, Tzu-Ching Meng, Chun-Hung Su, Andrew H.-J. Wang 25 Implementation of Bioinformatics Applications in Grid Services Chao-Tung Yang, Ya-Ling Chen, Tsu-Fen Han 26 Performance of Parallel Bioinformatics Software on Grid Environments Chao-Tung Yang, Ya-Ling Chen 27 Using Multi-Layer Unique Makers on BioGrid Environments Hui-Chen Peng, Chao-Tung Yang 28 A Hybrid Approaches to Analyze Gene Expression Pattern from B cell Lymphoma Microarray dataset Meng-Hsiun Tsai, Shun-Feng Su, Shin-Jr Lu, Ching-Hsue Cheng 29 Immune System Gene Studies of The Modern I-Ching System Theory Hong-Yeh Shen, Pao-Jyh Lee 30 EMSA: A Multiple Spliced Alignment Algorithm Fang Rong Hsu, Wei-Chung Shia 31 Arabidopsis Know cis-Element Analyser (Akela): A web tool to identify over-represented known cis-elements from a gene list Chih-Hung Jen, David Robert Westhea 32 A Motivation towards Enzyme Document Relation in Web Cheng-Yuan Liou, Sukanya Manna 33 BioModular - An Integrated System for Functional Module Discovery from Protein-Protein Interaction Network Sharon Chia-Wei Wang, Heng-Hui Liu, Jung-Hsien Chiang 34 PSE: A Tool for Discovering Protein Surfaces Hung-Jen Lin, Chih-Chiu Liu 35 The Research of Gene Engineering Methodology & Cellular Respiration Base On Modern I-Ching System Theory Yu-Nung Yu, Pao-Jyh Lee 36 Application of Hidden Markov Models for the Recognition of Erroneous Regions in the Electropherograms of EST Sequences Guan-I Wu, Yen-I Chiang 37 A Study on the Infection Factors of Dengue Fever And the Expansion Model of Virus-Transmitting Aedes Aegyti Analkin, Patrick S. Chen, C. T. Tsai 38 SMILE: Modern I-Ching System Theory and Bionic Knowledge Management Pao-Jyh Lee, Yu-Nung Yu, Hong-Yeh Shen 39 A web-based system for gene identifier exchange among databases to support gene expression annotation Yen-Chen,Chen, Yuan-Chii,Lee, Hung-Wen,Chiu 40 Stability and Fragility of the Protein-protein interaction networks Ka-Lok Ng, Chien-Hung Huang, Po-Han Lee, Jywe-Fei Fang, Han-Wen Hsiao 41 Probabilistic Boolean Networks Based on Hidden Markov Models for Genetic Regulation Chien-Hsing Wu, Hsiao-Feng Lu, Wen-Sheng Chuang 42 Two Stage Radial Basis Function Network Classifier for Protein Secondary Structure Prediction Yu-Yen Ou, Hsuen-Sheng Kuo, Jane Yung-jen Hsu, Yen-Jen Oyang 43 DNA sequence global and local alignment by use of quaternion correlation Hsuan T. Chang, S.-Wen Xiao, Neng-Wen Lo 44 Mining Evidences of Gene Expressions from Biomedical Database Yue-Shi Lee, Show-Jane Yen, You-Chang Liu 45 Analysis of Genomic DNA Sequence by Use of Parametric Spectral Estimate Hsuan T. Chang, Yu-Lin Liu, Ching-He Lee, Neng-Wen Lo, Chung J. Kuo 46 Group Feature Extraction and Multiple Indexing Sequence Alignment WEI-YAO CHOU, TUN-WEN PAI, Wen-Shyong Tzou, MARGARET DAH-TSYR CHANG, HSIU-LING TAI 47 The use of data fusion in the global transcriptome analysis of Down syndrome amniocytes ---Comparing the effects of rank and score combination Cheng-Hsien Tsai, D Frank Hsu, Fon-Jou Hsieh 48 Using Biological Knowledge and Molecular Interactions Ontology Enhance Automated Information Filtering and Knowledge Extraction–A case study on Apoptosis Chien-Chin Tu, Von-Wun Soo, Hsiang-Yuan Yeh, Wei-Chih Lin 49 Application of Fuzzy Set Theory and Hybrid Genetic Algorithm to Gene Sequence Alignment Problems Ping-Teng Chang, Tsun-Jen Cheng, Kuo-Ping Lin 50 The BEST: A Web-based platform for identifying targeted genes of a transcription factor Kuei-Yang Hsiao, Ko-Fan Chen, H. Sunny Sun, Chun-Liang Cheng, Shaw-Jenq Tsai 51 Genome-wide Identification of Hypoxia Inducible Factor Regulated Genes Ko-Fan Chen, Hsiang-Han Chan, H. Sunny Sun, Yen-Yu Lai, Shaw-Jenq Tsai 52 Fast Parallel DNA-based Algorithms for Molecular Computation: Quadratic Congruence and Factoring Integers Weng-Long Chang 53 Establish tumor-associated gene (TAG) database for bio-medical research Hsiang-Han Chan, Shaw-Jenq Tsai, H. Sunny Sun 54 Refinement of sequence structure on chromosome 22q11.2 region: application to the development of quantitative real-time PCR assay for clinical diagnosis Ying-Fan Chen, Po-Lin Kou, Shaw-Jenq Tsai, Ko-Fan Chen, Hsiang-Han Chan, Chung-Ming Chen, H. Sunny Sun 55 Genome Profile DataBase: an integrated system for complete microbial genome analysis Szu-Ming Lai, Nai-Wan Hsiao, Shiuh-Chaun Wang, Tsu-Sheng Wang, Chao-Sheng Cheng, Yaw-Jen Liu, Ping-Chiang Lyu 56 Deciphering the Human Protein Network in the Approach of Comparative Proteomics and Systems Biology Lin, C. Y., Lin, F.K, Lin, C. H, Cho, C.S., Chen C.L., Lo, C.Z., Hsiung, C. A. 57 The GMBD Bioinformatics Core -- A Toolbox for Systems Biology I-Shou Chang, Ping-Chiang Lyu, Chao A. Hsiung, Jenn-Kang Hwang, H. Sunny Sun 58 Mining Fuzzy Association Patterns in Microarray Databases Vincent S. Tseng, Yen-hsu Chen, Chun-Hao Chen 59 Quantitation of Protein Phosphorylation in Pregnant Rat Uteri Sheng-Yu Huang, Mei-Ling Tsai, Chin-Jen Wu, Jue-Liang Hsu, Shih-Hsin Ho, Shu-Hui Chen