Course Description　

UCSC Xena (http://xena.ucsc.edu/) is a web-based visual integration and exploration tool for multi-omic data and associated clinical and phenotypic annotations. Xena showcases seminal cancer genomics datasets from TCGA, the Pan-Cancer Atlas, PCAWG, GDC, GTEx, ICGC, and more; a total of more than 1500 datasets across 50 cancer types. We support virtually every type of functional genomics data including positional mutation data, copy number variation, gene and exon expression, DNA methylation, and protein expression, as well as phenotype and clinical data such as age and subtype.

日期: Dec 6, 2019
地點: 成大醫學院圖書館電腦教室

Time	Activity
09:00-09:30	Registration
Session 1: Overview Lecture
09:30-10:30	Overview of Xena 　* Visualizations 　* Analyses 　* Data, data, data Demo of Xena functionality
10:30-10:45	Break
Session 2: Computer Hands-on Workshop
10:45-12:15	Hands-on workshop: Basic Xena Usage 　* Visualizing common datasets 　* Filtering by phenotype/clinical data 　* Making and comparing subgroups 　* Running a survival analysis
12:15-14:00	Lunch
14:00-15:30	Hands-on workshop: Advanced Xena Usage 　* Visualizing rarer datasets 　* Genomic Signatures 　* Loading your own data 　* Other advanced features
15:30-15:45	Break
15:45-17:00	Q & A and one-on-one consultation/troubleshooting